

David Blicq A425M dblicq@rrc.mb.ca (update 01/04/2010) DIRECTORY I BIO I NOTICE BOARD
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Table of Contents
Laboratory Safety
Laboratory Records
Lab 1 - Use of Solubility to Characterize Organic Compounds
Lab 2 - Melting Point Determination
Lab 3 - Purification Method: Crystallization
Lab 4 - Purification Method: Distillation
Lab 5 - Volumetric Analysis of Analgesic Tablets
Lab 6 - Formal Research Project
Lab 7 - Chemical Measurement of Water Quality
Lab 8 - Isolation of Caffeine from Tea Leaves
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These laboratory exercises have been created for the students of the Chemical and Biosciences Technology program at Red River College, Winnipeg Manitoba. By design, the exercises contain selected errors and problems intended for the student to troubleshoot and remedy in the course of the activities.
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Laboratory Safety
In chemical experimentation there are always hazards present due to materials, equipment, and the reaction of materials. There is a simple rule of thumb:

WHAT YOU DONT KNOW CAN HURT YOU!
By following basic safety precautions you can minimize the probability and consequences of an accident.
PROTECT YOUR EYES!
1. Wear safety goggles when there is a risk of splattering, when working with
corrosive chemicals, and when working with apparatus under reduced or increased pressure
2. Never have your eyes over a vessel opening! Look at a vessel but never into it.
DO NOT POISON YOURSELF!
1. Regard all chemicals as poisons.
2. Do not eat in the laboratory.
3. Wear gloves when using chemicals that pose a health hazard by rapid adsorption through intact skin.
4. Handle obnoxious chemicals in a fume hood.
5. Deal with all spills immediately.
6. When finished working, wash hands thoroughly.
GUARD AGAINST FIRE!
1. Regard all organic liquids as flammable.
2. Solvents are to be stored only in closed containers: never in an open beaker.
Familiarize yourself with the location of Fire extinguishers, eye-washes, safety showers and first aid equipment in your laboratory!
NOTIFY YOUR INSTRUCTOR IMMEDIATELY OF ANY / ALL ACCIDENTS!
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LABORATORY PREPARATION
Students are expected to prepare for laboratories by completing the following:
1. Experiments are to have been read and an outline written up prior to each lab session.
2. Potential hazards and handling considerations for each experiment are to written up in your "Lab Log" before the laboratory session.
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LABORATORY RECORDS
- Your laboratory records, and your ability to record and present key technical data in a meaningful way are crucial skills in the BioSciences industry. With many industries / institutions being regulated (FDA / European union, etc.) complete accountability is essential.
- Most facilities are routinely audited, which involves highly detailed reviews of all records. Both you and the auditor(s) must be able to clearly account for each and every aspect of your work.
- Work prepared as part of these laboratories will require this same level of accountability, and you will be graded on both the accuracy and level of "information recovery" from your lab-log.
IN-LAB WORK (Lab Log)
All work is to be recorded in a hardbound book, with numbered pages. This is to ensure that data is never misplaced or "illegally substituted" after the fact. The rule of thumb is: write it down and leave it.
YOU WILL BE GRADED BOTH ON CONTENT AND THE ABOVE FORMAT!
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Laboratory 1
Use of Solubility to Characterize Organic Compounds
:Introduction
Information can often be obtained about an unknown substance by studying its solubility in water, 5% NaOH, 5% Sodium bicarbonate, 5% hydrochloric acid, and cold concentrated sulfuric acid. For example:
Objective:
The objective of this laboratory is to use a solubility flow-chart to characterize an unknown compound by examining solubility in a number of solvent systems.
Method:
Solubility Flow Chart:
Obtain a copy of the flow chartfrom the instructor.
Solubility Classes of Organic Compounds (from flow chart)
S2 - salts of organic acids (RCO2Na, RSO3Na), amine hydrochlorides (RNH3Cl), amino acids, and poly-functional compounds (functional groups are hydrophillic) i.e. carbohydrates, polyhydroxyl compounds, polybasic acids, etc.
SA - monofunctional carboxylic acids with (5) or fewer carbons, arenesulfonic acids.
SB - monofunctional amines with (6) carbons or fewer.
S1 - monofunctional alcohols, aldehydes, ketones, esters, nitriles, amides with (5) carbons or fewer.
A1 - strong organic acids: carboxylic acids with more than (6) carbons, phenols with electron-withdrawing groups in the o-, and p- positions, b -diketones.
A2 - weak organic acids: phenols, enols, oximes, imides, sulfonamides, thiophenols, all with more than (5) carbons, b -diketones, nitro compounds with a -hydrogens, sulfonamides.
B - aliphatic amines with (8) or more carbons, anilines (only one phenol group attached to nitrogen) some oxy ethers.
MN - miscellaneous neutral compounds containing nitrogen or sulfur and having more than (5) carbon atoms.
N1 - alcohols, aldehydes, methyl ketones, cyclic ketones and esters with one functional group and 5-9 carbons; ethers with < 8 carbon atoms, epoxides.
N2 - alkenes, alkynes, ethers some aromatic compounds (especially those with activating groups), ketones (other than those in class N1).
I - saturated hydrocarbons, haloalkanes, aryl halides, diaryl ethers, deactivated aromatic compounds.
(Note: carboxylic acid halides and anhydrides have not been classified due to their reactivity.)
Results:
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Laboratory 2
Melting Point Determination
Introduction
Melting point determination is another simple initial methods which can be used for identifying an unknown sample.
Determination of the melting point of a material is simple: the solid material is slowly heated until a softening or a droplet of liquid is observed. Typically the "melting point" (m.p.) is actually described as a range (melting range) which includes the temperature at which the "first drop" appears (lower limit) and temperature at which the material becomes entirely liquid (upper limit). For sample of most pure organic compounds, this range does not exceed 2° C.
There are three general rules for organic molecules:
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Melting points increase with increasing MW (molecular weight) |
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Symmetrical molecules have higher m.p. than asymmetrical molecules |
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Branched chain molecules have lower m.p. than linear molecules |
In a mixture of organic molecules, the m.p. of each component is normally depressed. This occurs because the impurities (the other components of the mixture) interfere with normal attractive interactions that occur in the pure compound. Also, the mixtures will display a wider melting range.
Objective:
The objective is simple: you will measure the m.p. of three organic compounds and then use the m.p. information to identify an unknown sample. Your m.p. determinations will be conducted two ways: both manually and using an automated melting point analyzer (Mettler FP5).
Method:
Prior to the laboratory,you are to reference the molecular formula, melting point and potential hazards of the three known samples: Benzoic acid, Salicylic acid and Urea.
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Heat the tubes slowly (1° C / minute is ideal) and look for the initial m.p. (the first softening that appears) and the temperature of complete liquidity (the melting range). Record your data for all three samples. |
5. Automated Analysis: place your three filled capillary tubes within the furnace of the Mettler FP5 apparatus.
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Set the temperature "ramp" speed for 3° C / minute |
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Set the starting furnace temperature for 10° C below the lowest m.p. of your samples. |
6. You will be given an unknown compound from the tested group. Repeat both the manual and automated procedures to identify the unknown compound.
Results:
Prepare a Table comparing reference m.p. data, your manual measurements and your automated measurements for all tested samples.
Identify the unknown sample.
Questions:
What are the advantages / disadvantages of both techniques?
What is the significance of the "ramp speed" in the autoanalyzer?
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Laboratory 3
Purification Method: Crystallization
:Introduction
Crystallization is a simple method for purifying an organic compound that is solid at room temperature. The method is quite simple: the compound is dissolved in hot solvent (until the solvent is saturated) and then the solution is allowed to cool slowly to a temperature below the melting point of the compound.
If cooling is slow enough, small quantities of the compound solidify and act as "seeds" for crystallization of the remaining product. If the cooling is too rapid the compound will simply precipitate rather than form crystals.
The choice of solvent is critical. Ideally the compound will be soluble in hot solvent and insoluble in cold solvent. Sometimes this is accomplished by mixing two miscible solvents.
Some Commonly used Solvents
Name |
Formula |
Boiling Point |
Water Miscible |
Comment |
Water |
H2O |
100 |
Y |
|
Methanol |
CH3OH |
65 |
Y |
Flammable |
Ethanol |
CH3CH2OH |
78 |
Y |
Flammable |
Acetone |
(CH3)2C=O |
56 |
Y |
Toxic |
Ethyl Acetate |
CH3CO2CH2CH3 |
77 |
N |
Flammable |
Chloroform |
CHCl3 |
61 |
N |
Toxic |
Methylene Chloride |
CH2Cl2 |
41 |
N |
|
Diethyl Ether |
(CH3CH2)2O |
35 |
N |
Flammable |
Cyclohexane |
C6H12 |
81 |
N |
Flammable |
Petroleum Ether |
CnH2n+2 |
20-60 |
N |
Flammable |
For example, petroleum ether is a mixture of pentane and hexane. Generally, in industrial applications the solution of material to be crystallized is called the "mother liquor".
Objective:
The objective is simple: you will be given an impure sample of benzoic acid, and you will use crystallization to purify your sample.
Method:
Results:
Questions:
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Laboratory 4
Purification Method: Distillation
:Introduction
Distillation is a basic method for purifying a liquid. The process is simple: slowly the liquid is converted to gas (vapourized) then the gas is converted back to liquid (condensation). Distillation takes advantage of differences in boiling points to separate and purify various compounds.
In liquids, molecules can move freely relative to each other although there are attractive forces between the molecules. Some molecules achieve sufficient kinetic energy to overcome the attractive forces and enter the "vapour phase". "Vapour pressure" (mm of Hg) measures the number of molecules capable of entering the vapour phase at a specific temperature and pressure. When atmospheric pressure and vapour pressure are equivalent bubbles of vapour form in the liquid: the liquid is "boiling".
If there is a mixture of two liquids with different boiling temperatures, there will be more vapour from the from the component with the lower boiling temperature. When the temperature of the mixture is raised to the boiling point of the "lower boiling" component, the vapour above the mixture will contain mostly the lower boiling liquid. If this vapour is cooled and collected, it is found to contain a much greater amount of the lower boiling component than the original mixture.
Objective:
The objective of this laboratory will be to use distillation to purify a contaminated ethanol solution.
Method:
Results:
Questions:
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Laboratory 5
Volumetric Analysis of Analgesic Tablets
Analgesic tablets are the most widely used non-prescription drugs in the world. There are many varieties in the marketplace, but the active ingredient is usually the same: acetylsalicylic acid. These tablets are often incorrectly called "Aspirins" after a popular commercial brand, but should be referred to as A.S.A. tablets.Introduction:
A typical commercial A.S.A tablet will contain not only the A.S.A., but also calcium carbonate and calcium sulfate or starch. The analysis is therefore quite simple: since acetylsalicylic acid is the only acidic component analysis for total acids should indicate the quantity of active ingredient.
Quality control in the pharmaceutical industry is of critical importance since the final products are usually for human consumption.
Objective:
The objective of this laboratory is quantify the amount of A.S.A. present in three different tablets, followed by the quantification of A.S.A. in an unknown tablet.
Method:
Results:
Questions:
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Laboratory 6
Formal Research Project
:Introduction
As a Research Scientist with a major chemical manufacturer you are often called upon to retrieve and present complicated technical information to help Production and / or Research Managers. In this exercise your manager has requested that you present a formal technical report on an urgent topic area.
There are two very simple requirements for this type of project:
- Your response must be quick.
- Your report must be meaningful, accurate and concise.
Method:
Project # -Title
Date - Name
Introduction: a brief description of information sought / topic
Contents: a brief list summarizing the presented material
Main Topic: the actual data / information recovered
Recommendations: recommend a course of action, as appropriate
References: all web-sites used must be clearly referenced
The formal report is due two weeks after the receiving the assignment.
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Laboratory 7
Chemical Measurement of Water Quality
One of the most common chemical treatments conducted on a daily basis is the treatment of water. Pre-use treatment typically involves a precipitation or flocculation to remove suspended solid materials (treatment with alum), a treatment to reduce pipe corrosion (treatment with phosphates) and chemical treatment to kill potential pathogenic microorganisms (chlorine). Some municipalities (such as Winnipeg) also use fluorine to promote dental hygiene.Introduction
Following municipal or industrial use, wastewater is normally treated before it is returned to the natural watershed. Wastewater treatment usually involves several steps: a primary (mechanical treatment) to remove contaminants, a secondary (chemical treatment) using microorganisms (etc.) in lagoons, reactors or biofilms, and a tertiary treatment (chemical additions to adsorb (i.e. carbon) or to oxidize (i.e. chlorine) contaminants.
Objective:
There are several standard methods for evaluating wastewater after such treatments have been conducted, and this laboratory will test four samples of water using these methods. The tests will include measurement of:
Chlorine: both pre- and post-use water treatment use chlorination. If there are more contaminants than chlorine, all chlorine is consumed. If there is sufficient chlorine (more than the contaminants) there will be residual chlorine present.
pH: is a measurement of the negative log of the hydrogen ion concentration.
Alkalinity: the capacity of the water to neutralize acid
Hardness: the level of dissolved cations (+ve charged ions) in the water.
Method:
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Fill the viewing tube with test sample |
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Add the contents of one DPT free chlorine reagent "pillow" to one tube. |
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Place the blank sample in the left side of the comparator, and place the sample + indicator in the right side of the comparator. |
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Hold up to a bright, steady light source and rotate the disk until the colours match. |
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Read and record the mg/ml of free chlorine. |
Measure and recordtotal chlorine in the sample, using a comparator. (Repeat step #2 but use DPT chlorine reagent pillow.
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Add (5) drops of phenolphthalein indicator to 50 ml of test sample in a beaker. |
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Fill a burette to the zero mark with 0.02N sulfuric acid. |
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Slowly add acid to the stirring sample until a pink colour develops. |
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Calculate P-alkalinity as: |
mg/ml CaCO3 = l H2SO4 x 1000 / ml of sample
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Add (4) drops of methyl purple to the sample and continue titration until a faint purple colour is seen. |
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Calculate T-alkalinity as: |
mg/L CaCO3 = ml of H2SO4 x 1000 / ml of sample
3. Measurement of Hardness by titration (total hardness: T hardness):
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Add (2) scoops of hardness buffer to 50 ml of fresh test sample in a beaker and stir until dissolved. |
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Add (2) scoops of hardness indicator to the sample in a beaker. Stir until dissolved. |
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Fill a burette to the zero mark with EDTA titrant. |
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Slowly add titrant to the sample while stirring until the red colour disappears and a blue colour appears. Calculate the hardness as: |
T hardness = ml titrant x 1000 / ml of sample
Results:
Record all results in a table format.
Discuss the significance of the results with respect to municipal water quality.
Describe two alternative (direct or indirect) measurements of water quality.
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Laboratory 8
Isolation of Caffeine from Tea Leaves
:Introduction
One important aspect of organic chemistry is the recovery and purification of compounds from natural sources. This laboratory will examine the recovery of caffeine from tea leaves, using extraction and sublimation procedures.
Caffeine is in the large class of compounds called alkaloids, which includes nitrogenous plant products that have a marked physiological action when administered to animals. The problem in recovering such products from a natural source is to identify the best method to remove the target compound from the background on contaminants, many of which may be quite similar to the target compound.
The properties of caffeine that will be exploited in this laboratory include solubility in hot water, solubility in methylene chloride at room temperature, and lack of formation of insoluble lead salts. As well, caffeine is basic and does not react with 5% NaOH as do the organic acids present in tea leaves.
Objective:
The objective of this laboratory is two-fold: to isolate caffeine from tea leaves, and to generate a schematic flow-chart describing the isolation and flow of both product and waste-streams. Many procedures in the Biochemical industry use similar flow-chart methods to describe their procedures.
Method:
Boil 150 ml of tap water (with boiling chips) in a 600 ml beaker.
Once boiling commences, add two tea bags and sustain the boil for 10 minutes.
After 10 minutes, reduce the heat and remove the tea bags with tongs. Add 40 ml of 10% lead acetate and boil the mixture for 15 minutes.
Results:
Prepare aschematic flow chartdetailing the flow of caffeine and contaminants from start to finish. The type of steps and product flow must be identified but the quantities of additions, etc. can be omitted. The flow chart should have sufficient detail that if the quantities of components for the various steps were provided the flow-chart would provide clear work instructions.
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